Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs742410 chr16:1499704 T/C 1.34E-7 183 13.33 14.12 4 KM Plot
ESCA rs74433718 chr8:8591546 A/C 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs74506539 chr1:247178854 C/A 1.22E-7 180 13.22 17.22 3.87 KM Plot
ESCA rs7465510 chr8:120887386 T/C 2.25E-7 180 3.47 18.57 12.9 KM Plot
ESCA rs7465526 chr8:120887459 T/C 2.25E-7 180 3.47 18.57 12.9 KM Plot
ESCA rs74756254 chr3:181965837 G/T 0 183 13.03 13.73 0.3 KM Plot
ESCA rs74961514 chr6:170140690 A/T 5.02E-8 182 12.93 20.65 1.57 KM Plot
ESCA rs749946 chr2:109390116 T/G 3.93E-9 182 12.97 14.57 2.93 KM Plot
ESCA rs75086137 chr6:170155925 G/A 4.62E-8 182 12.93 20.65 1.57 KM Plot
ESCA rs75196297 chr10:126734956 A/C 1.99E-5 183 13.37 12.97 5.8 KM Plot
ESCA rs7521422 chr1:247197025 G/A 6.21E-7 181 13.03 15.57 3.87 KM Plot
ESCA rs7535264 chr1:247194120 C/T 5.29E-7 182 13.03 17.95 3.87 KM Plot
ESCA rs7543803 chr1:247206885 C/T 4.66E-7 184 13.1 15.57 3.87 KM Plot
ESCA rs7549531 chr1:247214346 C/G 1.23E-7 180 13.1 14.13 3.87 KM Plot
ESCA rs7550095 chr1:247260362 A/T 4.59E-7 184 13.22 17.22 3.87 KM Plot